Hello folks,
Sage 2.10.4 has been released on March 17th, 2008. It is available at
http://sagemath.org/download.html
* About Sage (http://www.sagemath.org)
Sage is developed by volunteers and combines 71 open source packages.
It is available for download from sagemath.org and its mirrors in
source or binary form. If you have any questions and/or problems
please report them to the google groups sage-devel, sage-support,
You can also drop by in #sage-devel or #sage-support infreenode.
We have closed the Google Groups sage-newbie and sage-forum so
that we can deal with support questions in sage-support only. We
decided to close those two groups since we had various inquiries
left unanswered due to people posting to the wrong group.
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The following 32 people contributed code to this release:
* Michael Abshoff
* Martin Albrecht
* Nick Alexander
* Tom Boothby
* Robert Bradshaw
* Craig Citro
* Timothy Clemans
* John Cremona
* Karl-Dieter Crisman
* Didier Deshommes
* Dan Drake
* Burcin Erocal
* Gary Furnish
* Alex Ghitza
* Jason Grout
* Mike Hansen
* David Harvey
* Ryan Hinton
* David Joyner
* Josh Kantor
* Robert Miller
* Joel Mohler
* Willem Jan Palenstijn
* Clement Pernet
* Bill Purvis
* Yi Qiang
* David Roe
* Gordon Royle
* Franco Saliola
* Jaap Spies
* William Stein
* Carl Witty
Cheers,
Michael Abshoff (release chair), Robert Miller, William Stein
* Major Features, New Spkgs and Bugfixes
This
* Memory leaks exposed by modular symbols: Michael Abshoff,
Martin Albrecht, Burcin Erocal, Willem Jan Palenstijn,
Clement Pernet, William Stein: memory leaks exposed by
modular symbols functionality. This ticket is a composite
of numerous other memleak fixes merged over a *7 month*
period. Modular forms are an excellent way to expose
memory leaks in pretty much every algebraic component
of Sage and all known issues there are now finally fixed.
* SQLAlchemy and DSage: We merged SetupTools and SQLAlchemy
into Sage as standard packages. SQLAlchemy is now used as
in DSage replacing hand written code with much more
efficient classes from SQLAlchemy. SetupTools is required
to install SQLAlchemy, but is also useful for a number of
experimental spkgs like Mayavi2, TVTK and other packages
from the Enthought Tool Suite. Yi Qiang improved DSage
making it more robust and finally adding the documentation
to the standard Sage manual.
* Graph theory: chromatic polynomial: An algorithm originally
written in C by Gordon Royle has been adapted by Robert
Miller to replace the old slow method. This algorithm
uses a cut and merge algorithm to recursively compute
the chromatic polynomial, and is written in Cython.
* Documentation: Many doctest patches written during Doc
Day 2 were merged. In addition many people kept up the
good work after Doc Day 2 was over and have been
submitting patches to increase coverage. We did exceed
the target for the release by 0.6% reaching 47.6%.
* Symmetric function updates: Mike Hansen, reviewed by
Franco Saliola: Sage 2.10.4 adds support for Macdonald
polynomials, LLT polynomials, and Jack polynomials as
well as a whole class of user-defined symmetric functions
which can characterized by orthogonality and triangularity
conditions. Support for working with ribbon tableaux was
also added as part of these updates. In addition, many
doctests were added and subtle bugs fixed.
* Notebook Updates Tom Boothby and William Stein and
Timothy Clemans: Fixed a bunch of new and old issue that
improve the usability of the notebook. Among those are
a working trash, fixes to the polling infrastructure,
saving the content of unevaluated cells, URL issues to
work around problems introduced by restrictive firewalls
and small improvements to the interact command.
* Parallel Doctesting: Gary Furnish reviewed by Michael
Abshoff: "sage -tp" has been introduced as an experimental
multithreaded doctester. The first parameter is the number
of threads, and the second parameter is the folder to
doctest. Thus "sage -tp 4 devel/sage/sage" tests everything
with four threads running. Additional options like "-long"
or valgrind options like "-memcheck" do work. The code base
is still young and needs more testing. The eventual goal
will be to replace the current doctesting infrastructure
with this code base.
* SBox Class: Martin Albrecht introduced a new S-box class
to Sage to support (algebraic) exploration of this
fundamental cryptographic primitive.
* Known Issues with 2.10.4:
* None
* Bug Statistics
We closed 89 tickets. For details see
http://trac.sagemath.org/sage_trac/milestone/sage-2.10.4
or check out the closed ticket section at the end of the
announcement.
* Upcoming Releases
The next release will be 2.11, chaired by Michael Abshoff.
The release is planned in about two weeks. Potential features
(which are also the goals for 3.0) include:
* Upgrade many core components of Sage: Python 2.5.2,
ATLAS 3.8.1, clisp 2.44.1
* 50% doctest coverage
* OSX 10.5 support in 64 bit mode [this will depend on fixing
a vexing segfault in libSingular and getting disutils to
play nice with numpy]
* Pexpect interace to R
* Doctesting Coverage
For 2.10.3 we had:
Overall weighted coverage score: 44.5%
Total number of functions: 18640
We increased coverage by 3.1% in 2.10.4 while removing 24 functions:
Overall weighted coverage score: 47.6%
Total number of functions: 18616
* Closed Tickets:
Merged in final:
#185: Tom Boothby: Firefox + Xorg (Linux) take way too much
cputime while waiting for results from the notebook server
#432: William Stein: finish implementing deleting the trash
(emptying it) in the sage notebook.
#1590: Tom Boothby: notebook -- change it so changes are
saved even in cells that aren't evaluated
#1879: Tom Boothby: notebook -- registering redirects to
annoying url
#1974: Tom Boothby: when changing the title of a worksheet,
the javascript should change the document title (via
DOM or at worst forced reload)
#2332: Tom Boothby: notebook -- the evaluate link doesn't
#2492: Mike Hansen: Reference Manual: 18.2 Functions that
compute some of the sequences in Sloane's tables
#2532: David Roe: various padic bugfixes
#2550: Martin Albrecht: remove UTF-8 garbage from SBox file
#2552: Mike Hansen: fix problems in the combinat reference
manual caused by #2432
#2561: John Cremona: serious inefficiency in order of points
on elliptic curves over finite fields
#2563: Michael Abshoff: Fix outstanding doc issues for
2.10.4.final
#2564: Michael Abshoff: Sage 2.10.4.rc0: fix numerical noise
doctest failure in numerical/optimize.py
Merged in rc0:
#1765: Didier Deshommes: allow list of variables as second
input to solve command
#1862: Carl Witty: implement at least some sort of useful
rudimentary implicit 2d plotting function
#2143: Josh Kantor, Didier Deshommes, Mike Hansen: wrap scipy
optimization routines and cvxopt linear programming, add
gradient/hessian to calculus
#2244: Jason Grout, Alex Ghitza: add a randomize=False option
to the plot command, to avoid "wiggle" in animations
#2362: Joel Mohler: Integer digits method
#2372: Didier Deshommes: speedup to matrix_from_rows_and_columns
#2400: Jason Grout: maxima automatically simplifies floats
to rationals
#2444: Martin Albrecht: add UTF-8 support to sage -t
#2448: Nick Alexander: add docstrings, clean code in
quadratic_forms
#2454: Craig Citro: Start improving doctest coverage in
modular/modsym/
#2455: Martin Albrecht: improve documentation for multivariate
polynomial ideals
#2478: Gordon Royle, Robert Miller: chromatic polynomial revisited
#2485: John Cremona: Complete docstrings and doctests for
schemes/elliptic_curves
#2501: Martin Albrecht: SBox class for Sage
#2502: Martin Albrecht: doctest coverage for finite fields
#2505: Dan Drake: Sage has no Wronskian function
#2528: Craig Citro, William Stein: File sage/modular/dims_doc.py
should be removed soon
#2529: Robert Miller: slightly more preparation for backend
switch in graphs
#2530: William Stein: interact bug -- drop down menu default
doesn't show default value
#2533: Bill Purvis, Michael Abshoff: add "-p" flag to $CP
for make install to avoid long build times for the
sage library after an install
#2534: Mike Hansen: Sage does not handle Symmetrica's large
integers
#2538: Michael Abshoff, William Stein: Sage 2.10.4.rc0:
server/notebook/interact.py is broken due to #2530
#2540: Yi Qiang: add missing #long in dsage/tests/testdoc.py
#2541. Robert Miller: Fixes bugs in binary_code.pyx
#2542: Alex Ghitza: implement right_kernel() and
right_nullity() for matrices
#2543: Craig Citro: fix doctest in modular/modform/element.py
Merged in alpha0:
#454: Michael Abshoff, Martin Albrecht, Burcin Erocal, Willem
Jan Palenstijn, Clement Pernet, William Stein: memory
leaks exposed by modular symbols functionality [this
ticket is a composit of numerous other memleak fixes
merged over a *7 months* period. Modular forms are an
excellent way to expose memory leaks in pretty much
every algebraic component of Sage and all know issues
there are now finally fixed]
#520: Clement Pernet, Michael Abshoff: memory leak: some small
issues with Givaro
#1901: John Cremona: mistake in the documentation for gens for
Finite field pari
#1907: William Stein: matrix kernel() is broken (disagrees with
nullity())
#1976: William Stein: disable the use of openssl on linux as a
hack to generate security certificates quickly
#2205: Yi Qiang: new sqlalchemy.spkg package
#2066: William Stein:animate -- bug fix for xmin/ymin/xmax/ymax
and add a nice example requested by a user
#2192: Craig Citro: various Dirichlet character fixes and
improvements
#2212: Karl-Dieter Crisman: degree sequence documentation
#2280: Timothy Clemans: DistributedFactor doesn't return an
instance of sage.structure.factorization.Factorization
#2320: Yi Qiang: sage -server, sage -worker, sage -dsage broken
#2322: Yi Qiang: large dsage patch for 2.10.3
#2328: Mike Hansen, Dan Drake, David Joyner: many docstrings
in combinat functions are unhelpful, outdated, or wrong
#2354: Didier Deshommes: bug in matrix_real_double_dense
#2385: Joel Mohler: Multivariate Polynomial coefficients
#2397: Didier Deshommes: speed up matrix_from_rows and
matrix_from_columns
#2403: Didier Deshommes: Cannot copy Sequence
#2421: Didier Deshommes: .round(), .floor(), .ceil(), and .trunc()
on RealNumber should have the same return type
#2432: Mike Hansen, Franco Saliola: Add support for Macdonald
polynomials, LLT polynomials, Jack polynomials, etc.
#2447: John Cremona: lfunctions modules scores low on doctests
#2450: David Harvey: a few doctests for matrix_integer_dense
#2459: Didier Deshommes: Fix GSL_DISABLE_DEPRECAED macro in
setup.py
#2461: Robert Bradshaw, Alex Ghitza:vector norms should have a
reasonable default
#2473: Ryan Hinton, Robert Miller: BipartiteGraph.__init__ does
not properly initialize for some inputs
#2475: William Stein, Craig Citro: doctest -- get coverage
of modular/dims.py up to 100%
#2479: William Stein: RDF polynomial factoring bug
#2481: Jaap Spies: setuptools spkg
#2482: Gary Furnish: ptest iterators
#2483: Josh Kantor: Currently R help does not work
#2484: Carl Witty: "Conditional jump" in QuadDoubleElement __repr__
#2486: Gary Furnish: remove unused/broken vector and matrix pyx
files
#2487: Gary Furnish: remove unused/broken p-adic morphism.pyx
#2488: Gary Furnish: remove unused/broken hanke and pari pxy
files
#2489: Mike Hansen: symmetric crashes when giving a skew partition
to kostka_tab
#2499: William Stein, Willem Jan Palenstijn: cython -- issues with
cython-ing on the fly, also fixes #1559
#2503: Michael Abshoff: doctest failout in sage/misc/functional.py
from #2421
#2506: Robert Miller: fix problem with inequality operator (!=) in
graph.py
#2509: Nick Alexander, David Harvey: showstopper in xgcd(f, 0)
#2510: Robert Miller: Sage 2.10.4.a0: sage/graphs/graph_generators.py
doctest failure related to #2473
#2520: Mike Hansen: 2.10.4.a0: doctest failures in combinatorics
after merging #2489
#2524: Michael Abshoff, Clement Pernet: update givaro.spkg to
the 3.2.10.rc3 release